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A 3D architectural model of grass shoot morphogenesis and plasticity, driven by organ metabolite concentrations and coordination rules

Marion Gauthier , Romain Barillot , Anne Schneider , Camille Chambon , Christian Fournier , et al.
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtual, Germany
Communication dans un congrès hal-03059493v1

Phenotyping and modeling of water transport in roots

Yann Boursiac , Christophe Pradal , Fabrice Bauget , Stathis Delivorias , Mikael Lucas , et al.
iCROPM 2020 - Satellite workshop : Phenotyping and modeling of plant anchorage and physiology, Feb 2020, Montpellier, France
Communication dans un congrès hal-02935069v1
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Distributed Caching of Scientific Workflows in Multisite Cloud

Gaëtan Heidsieck , Daniel de Oliveira , Esther Pacitti , Christophe Pradal , Francois Tardieu , et al.
DEXA 2020 - 31st International Conference on Database and Expert Systems Applications, Sep 2020, Bratislava, Slovakia. pp.51-65, ⟨10.1007/978-3-030-59051-2_4⟩
Communication dans un congrès hal-02962579v1
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A functional structural model of grass development based on metabolic regulation and coordination rules

Marion Gauthier , Romain Barillot , Anne Schneider , Camille Chambon , Christian Fournier , et al.
Journal of Experimental Botany, 2020, 71 (18), pp.5454-5468. ⟨10.1093/jxb/eraa276⟩
Article dans une revue hal-02903070v1

MTG as a standard representation of plants in FSPMs

Christophe Pradal , Christophe Godin
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.86-87
Communication dans un congrès hal-03059523v1
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Étude des différentes approches d’indexation du génome au pan-génome : application aux génomes de riz

Clément Agret
Bio-informatique [q-bio.QM]. Montpellier SupAgro, 2020. Français. ⟨NNT : 2020NSAM0045⟩
Thèse tel-04054396v1
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MuSCA: a multi-scale source-sink carbon allocation model to 2 explore carbon allocation in plants. An application on static apple-tree

Francesco Reyes , Benoit Pallas , Christophe Pradal , Federico Vaggi , Tagliavini Marco , et al.
Annals of Botany, 2020, 126 (4), pp.571-585. ⟨10.1093/aob/mcz122⟩
Article dans une revue hal-02262908v1
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Simulating rhizodeposition as a function of shoot and root interactions within a new 3D Functional-Structural Plant Model

Frédéric Rees , Romain Barillot , Marion Gauthier , Loic Pagès , Christophe Pradal , et al.
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.22-23
Communication dans un congrès hal-02964060v1

Three-dimensional morphological model of water lilies Nymphaea spp. for breeding historical study

Shiryu Kirié , Christophe Pradal , Hideo Iwasaki , Koji Noshita , Hiroyoshi Iwata
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Oct 2020, Hanovre / Virtua, Germany. pp.61-62
Communication dans un congrès hal-03059518v1

Improving interoperability between phenomics and modelling communities by designing a Plant Modelling Ontology (PMO)

Clément Saint Cast , Guillaume Lobet , Llorenç Cabrera-Bosquet , Valentin Couvreur , Christophe Pradal , et al.
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.57-58
Communication dans un congrès hal-03059507v1
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Modelling transport of inhibiting and activating signals and their combined effects on floral induction: application to apple tree

Fares Belhassine , Damien Fumey , Jerome Chopard , Christophe Pradal , Sébastien Martinez , et al.
Scientific Reports, 2020, 10, pp.13085. ⟨10.1038/s41598-020-69861-8⟩
Article dans une revue hal-02919190v1
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A modelling framework for the simulation of signal transport within 3D structure: application for the simulation of within-tree variability in floral induction in apple trees

Fares Belhassine , Damien Fumey , Christophe Pradal , Jérôme Chopard , Evelyne Costes , et al.
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hannover / Virtual, Germany. pp.16-17
Communication dans un congrès hal-03059482v1
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iCROPM 2020: Crop Modeling for the Future

Gerrit Hoogenboom , Eric Justes , Christophe Pradal , Marie Launay , Senthold Asseng , et al.
Journal of Agricultural Science, 2020, 158 (10), pp.791 - 793. ⟨10.1017/s0021859621000538⟩
Article dans une revue hal-03342381v1
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Reuse of process-based models: automatic transformation into many programming languages and simulation platforms

Cyrille Ahmed Midingoyi , Christophe Pradal , Ioannis N. Athanasiadis , Marcello Donatelli , Andreas Enders , et al.
in silico Plants, 2020, 2 (1), pp.diaa007. ⟨10.1093/insilicoplants/diaa007⟩
Article dans une revue hal-02962262v1
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On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo

Charles-Elie Rabier , Vincent Berry , Jean-Christophe Glaszmann , Fabio Pardi , Celine Scornavacca
JOBIM 2020 - 20e Journées Ouvertes de Biologie, Informatique et Mathématique, Jun 2020, Montpellier, France.
Poster de conférence lirmm-04027842v1
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A novel NIR-image segmentation method for the precise estimation of above-ground biomass in rice crops

Julian D. Colorado , Francisco Calderon , Diego Mendez , Eliel Petro , Juan Pablo Rojas Bustos , et al.
PLoS ONE, 2020, 15 (10), ⟨10.1371/journal.pone.0239591⟩
Article dans une revue hal-03436148v1

Toward Virtual Modelling Environments using Notebooks for Phenotyping and Simulation of Plant Development

Frédéric Boudon , Jan Vaillant , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.99-100
Communication dans un congrès hal-03059535v1

What structural plant modelling and image-based phenotyping can learn from each other?

Christian Fournier , Simon Artzet , Francois Tardieu , Christophe Pradal
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtua, Germany. pp.55-56
Communication dans un congrès hal-03059496v1

Simulating the effects of water limitation on plant biomass using a 3D functional–structural plant model of shoot and root driven by soil hydraulics

Renato K Braghiere , Frederic Gerard , Jochem Evers , Christophe Pradal , Loic Pagès
Annals of Botany, 2020, 126 (4), pp.713-728. ⟨10.1093/aob/mcaa059⟩
Article dans une revue hal-02912597v1

Co-simulation with OpenAlea and GroIMP for cross-platform functional-structural plant modelling

Qinqin Long , Christophe Pradal , Winfried Kurth
FSPM 2020 - 9th International Conference on Functional-Structural Plant Models, Hochschule Geisenheim University; University of Hannover, Oct 2020, Hanovre / Virtual, Germany. pp.97-98
Communication dans un congrès hal-03059527v1