Next Generation Sequencers Efficiency Reconciliation Phylogenetic inference MRP Overlap graph Alignment PhyML Sequence alignment Genomics Human parasite Double cut and join DCJ De Bruijn graph Motif Tags Software Deep sequencing Consensus MCMC Phylogeny ChIP-seq Computational biology Complexity Trees Maximum likelihood Model Driven Engineering Suffix tree SAGE Scalability Bayes Overlap Species tree Data structure Transcriptome Plasmodium falciparum Dynamic update Greedy conjecture Bioinformatics RNA Construction algorithms Evolution Gene fusion Compatibility Next Generation Sequencing Automata Transcriptomics Duplication Phylogenetics K-mer Evolutionary trees Contracted de Bruijn graph Superstring Approximation Index Genome evolution HMM Gene tree HIV-1 Dynamic programming Graph Stringology Data mining Parsimony Supertree Tandem repeat Genome Sequencing Comparative genomics Sequence analysis Indexing Approximation algorithm Minisatellite VNTR Algorithms Mixture models Malaria Molecular evolution Greedy PHYLOGENIE Assembly Data structures Distance methods Coleoptera Suffix array Tandem repeats NGS Duplications Phylogenomics Least-squares Algorithm DGE Bioinformatique Reads Pattern matching ALGORITHME Tool Parameterized complexity Data compression DNA Index data structures