,
,
, , p.90
Posterior Bayes factors, J. R. Stat. Soc. B, vol.53, pp.111-142, 1991. ,
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference, Bioinformatics, vol.20, pp.407-415, 2004. ,
The intrinsic Bayes factor for model selection and prediction, J. Am. Stat. Assoc, vol.91, pp.109-122, 1996. ,
Bayesian model adequacy and choice in phylogenetics, Mol. Biol. Evol, vol.19, pp.1171-1180, 2002. ,
An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics, Syst. Biol, vol.54, pp.743-757, 2005. ,
Selection of conserved blocks from multiple alignment for their use in phylogenetic analysis, Mol. Biol. Evol, vol.17, pp.540-552, 2000. ,
Marginal likelihood from the Gibbs output, J. Am. Stat. Assoc, vol.90, pp.1313-1321, 1995. ,
Marginal likelihood from the MetropolisHastings output, J. Am. Stat. Assoc, vol.96, pp.270-281, 2001. ,
Evolutionary trees from DNA sequences: A maximum likelihood approach, J. Mol. Evol, vol.17, pp.368-376, 1981. ,
Success of the maximum likelihood phylogeny inference in the four taxon case, Mol. Biol. Evol, vol.12, pp.152-162, 1995. ,
Simulating normalizing constants: From importance sampling to bridge sampling to path sampling, Stat. Sci, vol.13, pp.163-185, 1998. ,
Bayesian data analysis, 2004. ,
Posterior predicive assessment of model fitness via realised discrepancies, Stat. Sinica, vol.6, pp.733-807, 1996. ,
Practical Markov chain Monte Carlo, Stat. Sci, vol.7, pp.473-483, 1992. ,
Estimating normalizing constants and reweighting mixtures in Markov chain Monte Carlo, 1994. ,
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination, Biometrika, vol.82, pp.711-732, 1995. ,
DOI : 10.2307/2337340
MCMC methods for computing Bayes factors: A comparative review, Biometrika, vol.82, pp.711-732, 2000. ,
Phylogenetic estimation: Traditional and Bayesian approaches, Nat. Rev. Genet, vol.4, pp.275-284, 2003. ,
Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo, Mol. Biol. Evol, vol.21, pp.1123-1133, 2004. ,
DOI : 10.1093/molbev/msh123
URL : https://academic.oup.com/mbe/article-pdf/21/6/1123/6152458/msh123.pdf
, , p.207
Potential applications and pitfalls of Bayesian inference of phylogeny, Syst. Biol, vol.51, pp.673-688, 2002. ,
MrBayes: Bayesian inference of phylogenetic trees, Bioinformatics, vol.17, pp.754-755, 2001. ,
Phylogenetic relationships of typical antbirds (Thamnophilidae) and test of incongruence based on Bayes factors, BMC Evol. Biol, vol.4, p.23, 2004. ,
Probability theory. The logic of science, 2003. ,
Some tests of significance, treated by the theory of probability, Proc. Camb. Phil. Soc, vol.31, pp.203-222, 1935. ,
The rapid generation of mutation data matrices from protein sequences, CABIOS, vol.8, pp.275-282, 1992. ,
Bayes factors and model uncertainty, J. Am. Stat. Assoc, vol.90, pp.773-795, 1995. ,
Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees, Mol. Biol. Evol, vol.16, pp.750-759, 1999. ,
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process, Mol. Biol. Evol, vol.21, pp.1095-1109, 2004. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00108585
Posterior predictive p-values, Ann. Stat, vol.22, pp.1142-1160, 1994. ,
DOI : 10.1214/aos/1176325622
URL : https://doi.org/10.1214/aos/1176325622
Simulating ratios of normalising constants via a simple identity: A theoretical exploration, Stat. Sinica, vol.6, pp.831-860, 1996. ,
Performance-based selection of likelihood models for phylogeny estimation, Syst. Biol, vol.52, pp.674-683, 2003. ,
Markov chain sampling methods for Dirichlet process mixture models, J. Comput. Graph. Stat, vol.9, pp.249-265, 2000. ,
Approximating Bayesian inference with the weigthed likelihood bootstrap, J. R. Stat. Soc. B, vol.56, pp.3-18, 1994. ,
Mapping mutations on phylogenies, Syst. Biol, vol.51, pp.729-739, 2001. ,
DOI : 10.1002/047001153x.g404309
Bayesian phylogenetic analysis of combined data, Syst. Biol, vol.53, pp.47-67, 2004. ,
A Monte Carlo method for high dimensional integration, Num. Math, vol.55, pp.137-157, 1989. ,
Fractional Bayes factors for model comparison, J. R. Stat. Soc. B, vol.57, pp.99-138, 1995. ,
A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data, Syst. Biol, vol.53, pp.561-581, 2004. ,
MUST, a computer package of management utilities for sequences and trees, Nucleic Acid Res, vol.21, pp.5264-5272, 1993. ,
Multigene analyses of bilaterian animals corroborate the monophyly of Ecysozoa, Lophotrochozoa and Protostomia, Mol. Biol. Evol, vol.22, pp.1246-1253, 2005. ,
Selecting the best-fit model of nucleotide substitution, Syst. Biol, vol.50, pp.580-601, 2001. ,
Practical Markov chain Monte Carlo]: Comment: One long run with diagnostics: Implementation strategies for Markov chain Monte Carlo, Stat. Sci, vol.7, pp.493-497, 1992. ,
Identifiability of parameters in MCMC Bayesian inference of phylogeny, Syst. Biol, vol.51, pp.754-760, 2002. ,
Bayesianly justifiable and relevant frequency calculations for the applied statistician, Ann. Stat, vol.4, pp.1151-1172, 1984. ,
Estimating the dimension of a model, Ann. Stat, vol.6, pp.461-464, 1978. ,
Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?, BMC Evol. Biol, vol.4, p.35, 2004. ,
Cross-validatory choice and assessment of statistical predictions, J. R. Stat. Soc. B, vol.36, pp.111-147, 1974. ,
Hierarchical phylogenetic models for analyzing multipartite sequence data, Syst. Biol, vol.52, pp.649-664, 2003. ,
Bayesian selection of continuous-time Markov chain evolutionary models, Mol. Biol. Evol, vol.18, pp.1001-1013, 2001. ,
Are guinea pigs rodents? The importance of adequate models in molecular phylogenetics, J. Mammal. Evol, vol.4, pp.77-86, 1997. ,
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, vol.22, pp.4673-4680, 1994. ,
Computing Bayes factors using a generalization of the Savage-Dickey density ratio, J. Am. Stat. Assoc, vol.90, pp.614-618, 1995. ,
Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data, Genome Inform, vol.13, pp.82-92, 2002. ,
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach, Mol. Biol. Evol, vol.18, pp.691-699, 2001. ,
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites, Mol. Biol. Evol, vol.10, pp.1396-1401, 1993. ,
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods, J. Mol. Evol, vol.39, pp.306-314, 1994. ,
Among site variation and its impact on phylogenetic analyses, Trends Ecol. Evol, vol.11, pp.367-370, 1996. ,