Reconstructing the duplication history of a tandem repeat, Proceedings of Intelligent Systems in Molecular Biology (ISMB1999), pp.44-53, 1999. ,
Reversal distance without hurdles and fortresses, LNCS, vol.3109, pp.388-399, 2004. ,
Notung: Dating gene duplications using gene family trees, Proceedings of the Fourth Annual International Conference on Computational Molecular Biology (RECOMB 2000), 2000. ,
Genome rearrangement by reversals and insertions/deletions of contiguous segments, CPM 2000, vol.1848, pp.222-234, 2000. ,
A fast and accurate distance-based algorithm to reconstruct tandem duplication trees, Bioinformatics, vol.18, pp.92-99, 2002. ,
An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees, Journal of Discrete Algorithms, vol.2, issue.2-4, pp.362-374, 2005. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00105291
Reconstructing the duplication history of tandemly repeated genes, Molecular Biology and Evolution, vol.19, pp.278-288, 2002. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00268603
MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, vol.19, issue.12, pp.1572-1576, 2003. ,
Phylogenies constrained by cross-over process as illustrated by human hemoglobins in a thirteen-cycle, eleven amino-acid repeat in human apolipoprotein A-I, Genetics, vol.86, pp.623-644, 1977. ,
Reconstructing the duplication history of tandemly repeated sequences, Mathematics of Evolution and Phylogeny, pp.205-235, 2005. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00106580
The complete human olfactory subgenome, Genome Research, vol.11, issue.5, pp.685-702, 2001. ,
Reconstruction of ancient molecular phylogeny, Molecular Phylogenetics and Evolution, vol.6, pp.189-213, 1996. ,
Evolutionary expansion and divergence in the znf91 subfamily of primate-specific zinc finger genes, Genome Research, vol.16, issue.5, pp.584-594, 2006. ,
Transforming cabbage into turnip (polynomial algorithm for sorting signed permutations by reversals), J. ACM, vol.48, pp.1-27, 1999. ,
A comprehensive catalogue of human krabassociated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors, Genome Research, vol.16, pp.669-677, 2006. ,
Methods for reconstructing the history of tandem repeats and their application to the human genome, Journal of Computer and System Sciences, vol.65, pp.494-507, 2002. ,
A faster and simpler algorithm for sorting signed permutations by reversals, SIAM Journal on Computing, vol.29, pp.880-892, 2000. ,
On reconstructing species trees from gene trees in term of duplications and losses, Proceedings of the Second Annual International Conference on Computational Biology (RECOMB 98), pp.182-191, 1998. ,
Reconciled trees and incongruent gene and species trees, DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol.37, pp.57-70, 1997. ,
IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex, Nucleic Acids Research, vol.31, issue.1, pp.311-315, 2003. ,
IMGT, the international ImMunoGeneTics database, Nucleic Acids Research, vol.28, pp.219-221, 2000. ,
The neighbor-joining method: a new method for reconstructing phylogenetic trees, Molecular Biology and Evolution, vol.4, pp.406-425, 1987. ,
r8s; inferring absolute rates of evolution and divergence times in the absence of a molecular clock, Bioinformatics, vol.19, pp.301-302, 2003. ,
Introduction to Computational Molecular Biology, 1997. ,
Differential expension of Zinc-Finger transcription factor loci in homologous human and mouse gene clusters, Genome Research, vol.13, pp.1097-1110, 2003. ,
Algorithm to find all sorting reversals, Proceedings of the second conference on computational molecular biology (RECOMB'02), pp.281-290, 2002. ,
, Molecular Systematics, chapter Phylogenetic Inference, pp.407-514, 1996.
Zinc finger gene clusters and tandem gene duplication, Proceedings of International Conference on Research in Molecular Biology (RECOMB2001), pp.297-304, 2001. ,
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
General time reversible distances with unequal rates across sites: Mixing t and inverse gaussian distributions with invariant sites, Molecular Phylogeny and Evolution, vol.8, pp.398-314, 1997. ,
Evolution of antennapedia-class homeobox genes, Genetics, vol.142, issue.1, pp.295-303, 1996. ,
Greedy method for inferring tandem duplication history, Bioinformatics, vol.19, pp.1497-1504, 2003. ,
Reversal distance for partially ordered genomes, Bioinformatics, vol.21, pp.502-508, 2003. ,