Reconstructing the duplication history of a tandem repeat, Proceedings of Intelligent Systems in Molecular Biology (ISMB1999), pp.44-53, 1999. ,
Topological rearrangements and local search method for tandem duplication trees, IEEE Transactions on Computational Biology and Bioinformatics, pp.15-28, 2005. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00105315
Notung, Proceedings of the fourth annual international conference on Computational molecular biology , RECOMB '00, 2000. ,
DOI : 10.1145/332306.332351
Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous Segments, CPM 2000, pp.222-234, 2000. ,
DOI : 10.1007/3-540-45123-4_20
An efficient and accurate distance based algorithm to reconstruct tandem duplication trees, Bioinformatics, vol.18, issue.Suppl 2, pp.92-99, 2002. ,
DOI : 10.1093/bioinformatics/18.suppl_2.S92
An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees, Journal of Discrete Algorithms, vol.2, pp.362-374, 2005. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00105291
Reconstructing the Duplication History of Tandemly Repeated Genes, Molecular Biology and Evolution, vol.19, issue.3, pp.278-288, 2002. ,
DOI : 10.1093/oxfordjournals.molbev.a004081
URL : https://hal.archives-ouvertes.fr/lirmm-00268603
MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, vol.19, issue.12, pp.1572-1576, 2003. ,
DOI : 10.1093/bioinformatics/btg180
Phylogenies constrained by cross-over process as illustrated by human hemoglobins in a thirteen-cycle, eleven amino-acid repeat in human apolipoprotein A-I, Genetics, vol.86, pp.623-644, 1977. ,
Reconstructing the duplication history of tandemly repeated sequences, Mathematics of Evolution and Phylogeny, pp.205-235, 2005. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00106580
The Combinatorics of Tandem Duplication Trees, Systematic Biology, vol.52, issue.1, pp.110-118, 2003. ,
DOI : 10.1080/10635150390132821
URL : https://hal.archives-ouvertes.fr/lirmm-00192006
The Complete Human Olfactory Subgenome, Genome Research, vol.11, issue.5, pp.685-702, 2001. ,
DOI : 10.1101/gr.171001
Reconstruction of Ancient Molecular Phylogeny, Molecular Phylogenetics and Evolution, vol.6, issue.2, pp.189-213, 1996. ,
DOI : 10.1006/mpev.1996.0071
Evolutionary expansion and divergence in the ZNF91 subfamily of primate-specific zinc finger genes, Genome Research, vol.16, issue.5, pp.584-594, 2006. ,
DOI : 10.1101/gr.4843906
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals, Journal of the ACM, vol.46, issue.1, pp.1-27, 1999. ,
DOI : 10.1145/300515.300516
A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors, Genome Research, vol.16, issue.5, pp.669-677, 2006. ,
DOI : 10.1101/gr.4842106
Methods for reconstructing the history of tandem repeats and their application to the human genome, Journal of Computer and System Sciences, vol.65, issue.3, pp.494-507, 2002. ,
DOI : 10.1016/S0022-0000(02)00006-5
A Faster and Simpler Algorithm for Sorting Signed Permutations by Reversals, SIAM Journal on Computing, vol.29, issue.3, pp.880-892, 2000. ,
DOI : 10.1137/S0097539798334207
A new method for calculating evolutionary substitution rates, Journal of Molecular Evolution, vol.46, issue.1, pp.86-93, 1984. ,
DOI : 10.1007/BF02101990
On reconstructing species trees from gene trees in term of duplications and losses, Proceedings of the second annual international conference on Computational molecular biology , RECOMB '98, pp.182-191, 1998. ,
DOI : 10.1145/279069.279113
Reconciled trees and incongruent gene and species trees, DIMACS Series in Discrete Mathematics and Theoretical Computer Science, vol.37, pp.57-70, 1997. ,
IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex, Nucleic Acids Research, vol.31, issue.1, pp.311-315, 2003. ,
DOI : 10.1093/nar/gkg070
IMGT, the international ImMunoGeneTics database, IMGT, the international ImMunoGeneTics database, pp.219-221, 2000. ,
DOI : 10.1093/nar/28.1.219
The neighbor-joining method: a new method for reconstructing phylogenetic trees, Molecular Biology and Evolution, vol.4, pp.406-425, 1987. ,
Differential Expansion of Zinc-Finger Transcription Factor Loci in Homologous Human and Mouse Gene Clusters, Genome Research, vol.13, issue.6, pp.1097-1110, 2003. ,
DOI : 10.1101/gr.963903