Taxon sampling versus computational complexity and their impact on obtaining the Tree of Life In Reconstructing the Tree of Life: Taxonomy and Systematics of Species Rich Taxa, Systematics Association Special Series, vol.72, pp.77-95, 2006. ,
Supertree Construction in the Genomic Age, Methods Enzymol, vol.395, pp.745-57, 2005. ,
DOI : 10.1016/S0076-6879(05)95038-6
The MRP method In Phylogenetic supertrees: combining information to reveal the Tree of Life, pp.17-34, 2004. ,
A supertree method for rooted trees, Discrete Applied Mathematics, vol.105, issue.1-3, pp.147-158, 2000. ,
DOI : 10.1016/S0166-218X(00)00202-X
URL : http://doi.org/10.1016/s0166-218x(00)00202-x
Modified Mincut Supertrees, Proceedings of the 2nd International Workshop on Algorithms in Bioinformatics (WABI'02, pp.537-552, 2002. ,
DOI : 10.1007/3-540-45784-4_41
Using Max Cut to Enhance Rooted Trees Consistency, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.3, issue.4, pp.323-333, 2006. ,
DOI : 10.1109/TCBB.2006.58
Improved Heuristics for Minimum-Flip Supertree Construction, Evolutionary Bioinformatics, vol.2, pp.401-4103, 2006. ,
Semi-strict supertrees, Cladistics, vol.49, issue.5, pp.514-525, 2002. ,
DOI : 10.1016/S0169-5347(97)01242-1
Minority rule supertrees? MRP, Compatibility, and Minimum Flip may display the least frequent groups, Cladistics, vol.3, issue.3, pp.282-294, 2005. ,
DOI : 10.1080/10635150290102483
Discriminating Supported and Unsupported Relationships in Supertrees Using Triplets, Systematic Biology, vol.55, issue.2, pp.345-350, 2006. ,
DOI : 10.1080/10635150500481556
Maximum Agreement and Compatible Supertrees, Proceedings of CPM, pp.205-219, 2004. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00108782
Maximum Agreement and Compatible Supertrees, JDA, vol.5, issue.3, pp.564-591, 2007. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00108782
PhySIC: A Veto Supertree Method with Desirable Properties, Systematic Biology, vol.56, issue.5, pp.798-817, 2007. ,
DOI : 10.1080/10635150701639754
URL : https://hal.archives-ouvertes.fr/lirmm-00194235
Consensus supertrees: The synthesis of rooted trees containing overlapping sets of labeled leaves, Journal of Classification, vol.46, issue.2, pp.335-348, 1986. ,
DOI : 10.1007/BF01894195
Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction, Journal of Computational Biology, vol.6, issue.3-4, pp.3-4369, 1999. ,
DOI : 10.1089/106652799318337
The information content of consensus trees Advances in Data Science and Classification. Studies in Classification, Data Analysis, and Knowledge Organization, pp.91-98, 1998. ,
Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics, BMC Bioinformatics, vol.7, issue.1, p.188, 2006. ,
DOI : 10.1186/1471-2105-7-188
URL : https://hal.archives-ouvertes.fr/halsde-00323971
SDM: A Fast Distance-Based Approach for (Super)Tree Building in Phylogenomics, Systematic Biology, vol.55, issue.5, pp.740-755, 2006. ,
DOI : 10.1080/10635150600969872
URL : https://hal.archives-ouvertes.fr/lirmm-00136655
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences, Journal of Molecular Evolution, vol.206, issue.5, Nov., pp.111-131, 1980. ,
DOI : 10.1007/BF01731581
Performance of Flip Supertree Construction with a Heuristic Algorithm, Systematic Biology, vol.53, issue.2, pp.299-308, 2004. ,
DOI : 10.1080/10635150490423719
OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics, BMC Evolutionary Biology, vol.7, issue.1, 2007. ,
DOI : 10.1186/1471-2148-7-241
URL : https://hal.archives-ouvertes.fr/halsde-00315511
Phylogenetic Analysis Using Parsimony (*and Other Methods) Version 4. Sinauer Associates, 2003. ,
Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups, Molecular Biology and Evolution, vol.24, issue.9, pp.2059-2068, 2007. ,
DOI : 10.1093/molbev/msm136
Using genomic data to unravel the root of the placental mammal phylogeny, Genome Research, vol.17, issue.4, pp.413-421, 2007. ,
DOI : 10.1101/gr.5918807
Genomics, biogeography, and the diversification of placental mammals, Proc. Nat. Acad. Sci, pp.10414395-14400, 2007. ,
DOI : 10.1073/pnas.0704342104
URL : https://hal.archives-ouvertes.fr/lirmm-00193171
Improvement of molecular phylogenetic inference and the phylogeny of Bilateria, Philos Trans R Soc Lond B Biol Sci, pp.962-8436, 2008. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00324421
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics, Electronic) Journal Article Research Support, Non-U.S. Gov't], pp.18-1471, 2004. ,
DOI : 10.1186/1471-2148-4-18
Broad phylogenomic sampling improves resolution of the animal tree of life, Nature, vol.22, issue.7188, pp.452745-452750, 2008. ,
DOI : 10.1038/nature06614
Finding a largest subset of rooted triples identifying a tree is an NP-hard task, Tech. rep., LIRMM, Univ. Montpellier, vol.2, 2007. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00143208
Constructing the Maximum Consensus Tree from Rooted Triples, Journal of Combinatorial Optimization, vol.8, issue.1, pp.29-39, 2004. ,
DOI : 10.1023/B:JOCO.0000021936.04215.68
On the Complexity of Inferring Rooted Evolutionary Trees, Electronic Notes in Discrete Mathematics, vol.7, pp.50-53, 2001. ,
DOI : 10.1016/S1571-0653(04)00222-7
Building Trees, Hunting for Trees, and Comparing Trees: theory and method in phylogenetic analysis, 1997. ,
Inferring the Root of a Phylogenetic Tree, Systematic Biology, vol.51, issue.1, pp.32-43, 2002. ,
DOI : 10.1080/106351502753475862
Inferring a Tree from Lowest Common Ancestors with an Application to the Optimization of Relational Expressions, SIAM Journal on Computing, vol.10, issue.3, pp.405-421, 1981. ,
DOI : 10.1137/0210030
The analysis of cross-classified categorical data, 1977. ,
DOI : 10.1007/978-0-387-72825-4