A canonical decomposition theory for metrics on a finite set, Advances in Mathematics, vol.92, issue.1, pp.47-105, 1992. ,
DOI : 10.1016/0001-8708(92)90061-O
Improved Parameterized Complexity of the Maximum Agreement Subtree and Maximum Compatible Tree Problems, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.3, issue.3, pp.289-302, 2006. ,
DOI : 10.1109/TCBB.2006.39
A reduction algorithm for computing the hybridization number of two trees, Evol. Bioinform, vol.3, pp.86-98, 2007. ,
NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks, Algorithms in Bioinformatics, WABI 2002, pp.375-391, 2002. ,
DOI : 10.1007/3-540-45784-4_28
A note on computing set overlap classes, Information Processing Letters, vol.108, issue.4, pp.186-191, 2008. ,
DOI : 10.1016/j.ipl.2008.05.005
URL : https://hal.archives-ouvertes.fr/lirmm-00325371
Mathematics Is Biology's Next Microscope, Only Better; Biology Is Mathematics' Next Physics, Only Better, PLoS Biology, vol.88, issue.12, p.439, 2004. ,
DOI : 10.1371/journal.pbio.0020439.t001
URL : http://doi.org/10.1371/journal.pbio.0020439
Pattern pluralism and the Tree of Life hypothesis, Proc. Natl Acad. Sci. USA, pp.2043-2049, 2007. ,
DOI : 10.1073/pnas.0610699104
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters, Proceedings of the Ninth International Conference on Research in Computational Molecular Biology (RECOMB), 2005. ,
DOI : 10.1007/11415770_17
Efficient reconstruction of phylogenetic networks with constrained recombination, Proceedings of the IEEE Computer Society Conference on Bioinformatics, p.363, 2003. ,
A Decomposition Theory for Phylogenetic Networks and Incompatible Characters, Journal of Computational Biology, vol.14, issue.10, pp.1247-1272, 2007. ,
DOI : 10.1089/cmb.2006.0137
Efficient algorithms for lateral gene transfer problems, Proceedings of the fifth annual international conference on Computational biology , RECOMB '01, pp.149-156, 2001. ,
DOI : 10.1145/369133.369188
A heuristic method to reconstruct the history of sequences subject to recombination, Journal of Molecular Evolution, vol.36, issue.4, pp.396-405, 1993. ,
DOI : 10.1007/BF00182187
Reconstructing the Evolutionary History of Polyploids from Multilabeled Trees, Molecular Biology and Evolution, vol.23, issue.9, pp.1784-1791, 2007. ,
DOI : 10.1093/molbev/msl045
Computing recombination networks from binary sequences, Bioinformatics, vol.21, issue.Suppl 2, pp.159-165, 2005. ,
DOI : 10.1093/bioinformatics/bti1126
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/21/suppl_2/ii159
Application of Phylogenetic Networks in Evolutionary Studies, Molecular Biology and Evolution, vol.23, issue.2, pp.254-267, 2006. ,
DOI : 10.1093/molbev/msj030
Beyond Galled Trees - Decomposition and Computation of Galled Networks, Proceedings of the Eleventh International Conference on Research in Computational Molecular Biology (RECOMB), 2007. ,
DOI : 10.1007/978-3-540-71681-5_15
Summarizing Multiple Gene Trees Using Cluster Networks, Algorithms in Bioinformatics, WABI 2008, pp.211-225, 2008. ,
DOI : 10.1007/978-3-540-87361-7_25
Phylogenetic super-networks from partial trees, IEEE/ACM TCBB, vol.1, pp.151-158, 2004. ,
Reconstruction of Reticulate Networks from Gene Trees, Proceedings of the Ninth International Conference on Research in Computational Molecular Biology (RECOMB), pp.233-249, 2005. ,
DOI : 10.1007/11415770_18
Dendroscope: An interactive viewer for large phylogenetic trees, BMC Bioinformatics, vol.8, issue.1, p.460, 2007. ,
DOI : 10.1186/1471-2105-8-460
SEEING THE TREES AND THEIR BRANCHES IN THE NETWORK IS HARD, Theoretical Computer Science, pp.153-164, 2008. ,
DOI : 10.1142/9789812770998_0011
Reconstructing patterns of reticulate evolution in plants, American Journal of Botany, vol.91, issue.10, pp.1700-1708, 2004. ,
DOI : 10.3732/ajb.91.10.1700
Minimum Recombination Histories by Branch and Bound, Proceedings of the Workshop on Algorithms in Bioinformatics (WABI). Mallorca, Spain, pp.239-250, 2005. ,
DOI : 10.1007/11557067_20
Fixed topology alignment with recombination, Proceedings of the 9th Annual Symposium on Combinatorial Pattern Matching (CPM'98 of Lecture Notes in Computer Science, pp.174-188, 1998. ,
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and domiance of horizontal gene transfer in the evolution of prokaryotes, BMC Evol. Biol, vol.3, issue.2, 2003. ,
Finding a maximum compatible tree is NP-hard for sequences and trees, Appl. Math. Lett, vol.9, pp.55-60, 1996. ,
Constructing Minimal Ancestral Recombination Graphs, Journal of Computational Biology, vol.12, issue.2, pp.147-169, 2005. ,
DOI : 10.1089/cmb.2005.12.147
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships, BMC Bioinformatics, vol.9, issue.1, pp.1-16, 2008. ,
DOI : 10.1186/1471-2105-9-322
Constructing the simplest possible phylogenetic network from triplets, Proceedings of ISAAC'08, pp.472-483, 2008. ,
Constructing Level-2 Phylogenetic Networks from Triplets, International Conference on Computational Molecular Biology (RECOMB), pp.450-462, 2008. ,
DOI : 10.1007/978-3-540-78839-3_40
Perfect phylogenetic networks with recombination, Proceedings of the 2001 ACM symposium on Applied computing , SAC '01, 2001. ,
DOI : 10.1145/372202.372271