HOVERGEN: a database of homologous vertebrate genes, Nucleic Acids Research, vol.22, issue.12, pp.2360-2365, 1994. ,
DOI : 10.1093/nar/22.12.2360
URL : https://hal.archives-ouvertes.fr/hal-00698069
HOVERGEN: database and software for comparative analysis of homologous vertebrate genes, Bioinformatics Databases and Systems Edited by: Letovsky S, pp.13-29 ,
Phylogenetic position of the order Lagomorpha (rabbits, hares and allies), Nature, vol.379, issue.6563, pp.333-335, 1996. ,
DOI : 10.1038/379333a0
URL : https://hal.archives-ouvertes.fr/hal-00435019
Continental breakup and the ordinal diversification of birds and mammals, Nature, vol.381, issue.6579, pp.226-229, 1996. ,
DOI : 10.1038/381226a0
Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences, Proceedings of the National Academy of Sciences, vol.95, issue.16, pp.9407-9412, 1998. ,
DOI : 10.1073/pnas.95.16.9407
High genomic deleterious mutation rates in hominids, Nature, vol.397, issue.6717, pp.344-347, 1999. ,
DOI : 10.1038/16915
Determinants of Substitution Rates in Mammalian Genes: Expression Pattern Affects Selection Intensity but Not Mutation Rate, Molecular Biology and Evolution, vol.17, issue.1, pp.68-74, 2000. ,
DOI : 10.1093/oxfordjournals.molbev.a026239
URL : https://hal.archives-ouvertes.fr/hal-00427068
Genomic Divergences between Humans and Other Hominoids and the Effective Population Size of the Common Ancestor of Humans and Chimpanzees, The American Journal of Human Genetics, vol.68, issue.2, pp.444-456, 2001. ,
DOI : 10.1086/318206
Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms, Proceedings of the National Academy of Sciences, vol.98, issue.5, pp.2497-2502, 2001. ,
DOI : 10.1073/pnas.051611498
Clustering of housekeeping genes provides a unified model of gene order in the human genome, Nature Genetics, vol.31, issue.2, pp.180-183, 2002. ,
DOI : 10.1038/ng887
Heterogeneous Genomic Molecular Clocks in Primates, PLoS Genetics, vol.16, issue.10, p.163, 2006. ,
DOI : 10.1371/journal.pgen.0020163.st002
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes, Genome Research, vol.18, issue.9, pp.1393-1402, 2008. ,
DOI : 10.1101/gr.076992.108
URL : https://hal.archives-ouvertes.fr/hal-00428199
Ensembl 2008, Nucleic Acids Research, vol.36, issue.Database, pp.707-714, 2008. ,
DOI : 10.1093/nar/gkm988
URL : http://doi.org/10.1093/nar/gkm988
ACNUC ??? a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage, Bioinformatics, vol.1, issue.3, pp.167-172, 1985. ,
DOI : 10.1093/bioinformatics/1.3.167
URL : https://hal.archives-ouvertes.fr/hal-00697905
WWW-query: An on-line retrieval system for biological sequence banks, Biochimie, vol.78, issue.5, pp.364-369, 1996. ,
DOI : 10.1016/0300-9084(96)84768-7
Remote access to ACNUC nucleotide and protein sequence databases at PBIL, Biochimie, vol.90, issue.4, pp.555-562, 2008. ,
DOI : 10.1016/j.biochi.2007.07.003
URL : https://hal.archives-ouvertes.fr/hal-00428117
HOBACGEN: Database System for Comparative Genomics in Bacteria, Genome Research, vol.10, issue.3 ,
DOI : 10.1101/gr.10.3.379
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases, Bioinformatics, vol.21, issue.11, pp.2596-2603, 2005. ,
DOI : 10.1093/bioinformatics/bti325
URL : https://hal.archives-ouvertes.fr/hal-00427861
Petabyte-scale innovations at the European Nucleotide Archive, Nucleic Acids Research, vol.37, issue.Database, pp.19-25, 2009. ,
DOI : 10.1093/nar/gkn765
The EMBL Nucleotide Sequence and Genome Reviews Databases, Methods Mol Biol, vol.406, pp.1-22, 2007. ,
DOI : 10.1007/978-1-59745-535-0_1
[33] Analysis of compositionally biased regions in sequence databases, Methods Enzymol, vol.266, pp.554-571, 1996. ,
DOI : 10.1016/S0076-6879(96)66035-2
Gapped BLAST and PSI-BLAST: A new generation of ,
Codon Bias and Base Composition Are Poor Indicators of Horizontally Transferred Genes, Molecular Biology and Evolution, vol.18, issue.3, pp.404-412, 2001. ,
DOI : 10.1093/oxfordjournals.molbev.a003816
Phylogenetic identification of lateral genetic transfer events, BMC Evolutionary Biology, vol.6, issue.1, p.15, 2006. ,
DOI : 10.1186/1471-2148-6-15
A Model of Horizontal Gene Transfer and the Bacterial Phylogeny Problem, Systematic Biology, vol.56, issue.4, pp.633-642, 2007. ,
DOI : 10.1080/10635150701546231
URL : https://hal.archives-ouvertes.fr/halsde-00424419
Detecting Lateral Genetic Transfer, Methods Mol Biol, vol.452, pp.457-469, 2008. ,
DOI : 10.1007/978-1-60327-159-2_21
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
PHYLIP ? Phylogeny inference package (Version 3.2), Cladistics, vol.5, pp.164-166, 1989. ,