KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase, The EMBO Journal, vol.19, issue.21, pp.3770-3780, 2005. ,
DOI : 10.1046/j.1365-2958.2003.03574.x
URL : https://hal.archives-ouvertes.fr/hal-00013989
Phylogenomics and the reconstruction of the tree of life, Nature Reviews Genetics, vol.3, issue.5, pp.361-375, 2005. ,
DOI : 10.1038/nrg1603
URL : https://hal.archives-ouvertes.fr/halsde-00193293
Efficient multiple genome alignment, Bioinformatics, vol.18, issue.Suppl 1, pp.312-320, 2002. ,
DOI : 10.1093/bioinformatics/18.suppl_1.S312
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.7.22
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements, Genome Research, vol.14, issue.7, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
Glocal alignment: finding rearrangements during alignment, Bioinformatics, vol.19, issue.Suppl 1, pp.54-62, 2003. ,
DOI : 10.1093/bioinformatics/btg1005
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/19/suppl_1/i54
Versatile and open software for comparing large genomes, Genome Biology, vol.5, issue.2, p.12, 2004. ,
DOI : 10.1186/gb-2004-5-2-r12
Chaining algorithms for multiple genome comparison, Journal of Discrete Algorithms, vol.3, issue.2-4, pp.321-341, 2005. ,
DOI : 10.1016/j.jda.2004.08.011
URL : http://doi.org/10.1016/j.jda.2004.08.011
Breakpoint phylogenies, Genome Informatics, pp.25-34, 1997. ,
YASS: enhancing the sensitivity of DNA similarity search, Nucleic Acids Research, vol.33, issue.Web Server, pp.540-543, 2005. ,
DOI : 10.1093/nar/gki478
URL : https://hal.archives-ouvertes.fr/inria-00100004
A hierarchical approach to aligning collinear regions of genomes, Bioinformatics, vol.18, issue.12, pp.1673-1680, 2002. ,
DOI : 10.1093/bioinformatics/18.12.1673
Genome Reviews: Standardizing Content and Representation of Information about Complete Genomes, OMICS: A Journal of Integrative Biology, vol.10, issue.2, pp.114-118, 2006. ,
DOI : 10.1089/omi.2006.10.114
Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops, BMC Bioinformatics, vol.6, issue.1, p.171, 2005. ,
DOI : 10.1186/1471-2105-6-171
OMA Browser Exploring orthologous relations across 352 complete genomes, Bioinformatics, vol.23, issue.16, pp.2180-2182, 2007. ,
DOI : 10.1093/bioinformatics/btm295
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/23/16/2180