Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome", Proc. Natl Acad. Sci. USA, pp.13950-13955, 2005. ,
DOI : 10.1073/pnas.0506758102
Measuring genome evolution, Proc. Natl Acad. Sci. USA, 95, pp.5849-5856, 1998. ,
DOI : 10.1073/pnas.95.11.5849
Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops, BMC Bioinformatics, vol.6, issue.1, p.171, 2005. ,
DOI : 10.1186/1471-2105-6-171
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements, Genome Research, vol.14, issue.7, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
Glocal alignment: finding rearrangements during alignment, Bioinformatics, vol.19, issue.Suppl 1, pp.54-62, 2003. ,
DOI : 10.1093/bioinformatics/btg1005
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/19/suppl_1/i54
Precise detection of rearrangement breakpoints in mammalian chromosomes, BMC Bioinformatics, vol.9, issue.1, p.286, 2008. ,
DOI : 10.1186/1471-2105-9-286
URL : https://hal.archives-ouvertes.fr/inria-00278553
Computational Molecular Biology, 2000. ,
Regulatory Potential Scores From Genome-Wide Three-Way Alignments of Human, Mouse, and Rat, Genome Research, vol.14, issue.4, pp.700-707, 2004. ,
DOI : 10.1101/gr.1976004
Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling, PLoS Genetics, vol.95, issue.9, p.153, 2007. ,
DOI : 10.1371/journal.pgen.0030153.st005
URL : https://hal.archives-ouvertes.fr/hal-01197542
Genome-based approaches to develop vaccines against bacterial pathogens, Vaccine, vol.27, issue.25-26, pp.3245-3250, 2009. ,
DOI : 10.1016/j.vaccine.2009.01.072
Post-genomic vaccine development, FEBS Letters, vol.4, issue.12, pp.2985-2992, 2006. ,
DOI : 10.1016/j.febslet.2006.04.084
Identification of a Universal Group B Streptococcus Vaccine by Multiple Genome Screen, Science, vol.309, issue.5731, pp.148-150, 2005. ,
DOI : 10.1126/science.1109869
Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity, Journal of Bacteriology, vol.188, issue.7, pp.2533-2542, 2006. ,
DOI : 10.1128/JB.188.7.2533-2542.2006
URL : https://hal.archives-ouvertes.fr/hal-00113068
A Genomic Perspective on Protein Families, Science, vol.278, issue.5338, pp.631-637, 1997. ,
DOI : 10.1126/science.278.5338.631
The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number, Proc. Natl Acad. Sci. USA, pp.838-843, 2005. ,
DOI : 10.1073/pnas.0406633102
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement, PLoS ONE, vol.15, issue.6, p.11147, 2010. ,
DOI : 10.1371/journal.pone.0011147.s005
Reconstructing large regions of an ancestral mammalian genome in silico, Genome Research, vol.14, issue.12, pp.2412-2423, 2004. ,
DOI : 10.1101/gr.2800104
Analysis of T-cell responses in cattle immunized against heartwater by vaccination with killed elementary bodies of Cowdria ruminantium, Infect. Immun, vol.65, pp.236-241, 1997. ,
An assessment of the economic impact of heartwater (Cowdria ruminantium infection) and its control in Zimbabwe, Preventive Veterinary Medicine, vol.39, issue.3, pp.173-189, 1999. ,
DOI : 10.1016/S0167-5877(98)00143-3
YASS: enhancing the sensitivity of DNA similarity search, Nucleic Acids Research, vol.33, issue.Web Server, pp.540-543, 2005. ,
DOI : 10.1093/nar/gki478
URL : https://hal.archives-ouvertes.fr/inria-00100004
BioMart ??? biological queries made easy, BMC Genomics, vol.10, issue.1, p.22, 2009. ,
DOI : 10.1186/1471-2164-10-22
URL : http://doi.org/10.1186/1471-2164-10-22