N. Bhatia, N. H. Shah, D. L. Rubin, A. P. Chiang, and M. A. Musen, Comparing Concept Recognizers for Ontology-Based Indexing : MGREP vs, 2008.

O. Bodenreider and R. Stevens, Bio-ontologies: current trends and future directions, Briefings in Bioinformatics, vol.7, issue.3, pp.256-274, 2006.
DOI : 10.1093/bib/bbl027

N. F. Mathieu-d-'aquin and . Noy, Where to Publish and Find Ontologies ? A Survey of Ontology Libraries, journal of Web Semantics, vol.11, pp.96-111, 2012.

S. Darmoni, . Pereira, . Neveol, . Massari, C. Dahamna et al., French infobutton : an academic and... business perspective, AMIA Symp, p.920, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00503265

. Stéfan-jacques-darmoni, J. P. Beno??tbeno??t-thirion, M. Leroy, F. Douyère, J. Baudic et al., Cismef : a structured health resource guide for healthcare professionals and patients, RIAO, pp.819-829, 2000.

N. F. Amir-ghazvinian, M. A. Noy, and . Musen, Creating Mappings For Ontologies in Biomedicine : Simple Methods Work, American Medical Informatics Association Annual Symposium, AMIA'09, pp.198-202, 2009.

N. F. Amir-ghazvinian, C. Noy, . Jonquet, H. Nigam, M. A. Shah et al., What Four Million Mappings Can Tell You about Two Hundred Ontologies, 8th International Semantic Web Conference, ISWC'09, pp.229-242, 2009.
DOI : 10.1007/978-3-642-04930-9_15

C. Golbreich, G. Julien, and S. Darmoni, FMA and HMTP Portal in OWL : Reconciling Ontology with Terminology in Life Sciences via Metamodeling, 2010.
URL : https://hal.archives-ouvertes.fr/lirmm-00534124

J. Grosjean, . Merabti, . Griffon, . Dahamna, S. Soualmia et al., Multiterminology cross-lingual model to create the health terminology/ontology portal, 2012.

J. Grosjean, T. Merabti, B. Dahamna, I. Kergourlay, L. F. Benoit-thirion et al., Health Multi-Terminology Portal : a semantics added-value for patient safety, Patient Safety Informatics -Adverse Drug Events, Human Factors and IT Tools for Patient Medication Safety, pp.129-138, 2011.

C. Jonquet, P. Lependu, S. Falconer, A. Coulet, N. F. Noy et al., NCBO Resource Index: Ontology-based search and mining of biomedical resources, 1st prize of Semantic Web Challenge at the 9th International Semantic Web Conference, ISWC'10, pp.316-324, 2011.
DOI : 10.1016/j.websem.2011.06.005

URL : https://hal.archives-ouvertes.fr/hal-00557982

C. Jonquet, M. A. Musen, and N. H. Shah, Building a biomedical ontology recommender web service, Journal of Biomedical Semantics, vol.1, issue.Suppl 1, 2010.
DOI : 10.1038/nbt1346

URL : https://hal.archives-ouvertes.fr/hal-00489093

C. Jonquet, H. Nigam, M. A. Shah, and . Musen, Un service Web pour l???annotation s??mantique de donn??es biom??dicales avec des ontologies, 13emes Journees Francophones d'Informatique Medicale, JFIM'09, 2009.
DOI : 10.1007/978-2-287-99305-3_14

G. Kerdelhué, Utilisation du thésaurus MeSH dans le site CISMeF. Documentaliste -Sciences de l'information, 2007.

M. Lenzerini, Data integration, Proceedings of the twenty-first ACM SIGMOD-SIGACT-SIGART symposium on Principles of database systems , PODS '02, pp.233-246, 2002.
DOI : 10.1145/543613.543644

A. Mark, N. F. Musen, N. H. Noy, P. L. Shah, C. G. Whetzel et al., The national center for biomedical ontology, JAMIA, vol.19, issue.2, pp.190-195, 2012.

N. F. Noy, N. B. Griffith, and M. A. Musen, Collecting Community-Based Mappings in an Ontology Repository, 7th International Semantic Web Conference, ISWC'08, pp.371-368, 2008.
DOI : 10.1038/nbt1346

N. F. Noy, M. Dorf, N. B. Griffith, C. Nyulas, and M. A. Musen, Harnessing the Power of the Community in a Library of Biomedical Ontologies, Workshop on Semantic Web Applications in Scientific Discourse, SWASD'09 CEUR Workshop Proceedings, p.11, 2009.

S. Pereira, P. Massari, A. Buemi, B. Dahamna, E. Serrot et al., F-MTI : outil d'indexation multi-terminologique : applicationàapplicationà l'indexation automatique de la SNOMED, Risques, technologies de l'information pour les pratiques médicales : comptes rendus destreizì emes journées francophones d'informatique médicale, pp.57-67, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00483047

A. Reymonet, J. Thomas, and N. Aussenac-gilles, Modélisation de Ressources Termino-Ontologiques en OWL, Actes des Journées Francophones d'Ingénierie des Connaissances, pp.169-180, 2007.

L. Daniel, S. E. Rubin, C. J. Lewis, S. Mungall, M. Misra et al., National Center for Biomedical Ontology : Advancing Biomedicine through Structured Organization of Scientific Knowledge, OMICS : A Journal of Integrative Biology, vol.10, issue.2, pp.185-198, 2006.

S. Sakji, . Gicquel, . Pereira, . Kergoulay, . Proux et al., Evaluation of a french medical multi-terminology indexer for the manual annotation of natural language medical reports of healthcare-associated infections, MEDINFO 2010 -Proceedings of the 13th World Congress on Medical Informatics, pp.252-256, 2010.

S. Sakji, C. Letord, S. Pereira, B. Dahamna, M. Joubert et al., Drug Information Portal in Europe : information retrieval with multiple health terminologies, 22th International Conference of the European Federation for Medical Informatics, MIE'09, pp.497-501, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00483005

M. Salvadores, M. Horridge, P. R. Alexander, R. W. Fergerson, M. A. Musen et al., Using SPARQL to Query BioPortal Ontologies and Metadata, Proceedings of the 11th international conference on The Semantic Web -Volume Part II, ISWC'12, pp.180-195, 2012.
DOI : 10.1007/978-3-642-35173-0_12

J. Shon and M. Musen, The low availability of metadata elements for evaluating the quality of medical information on the world wide web, Proc AMIA Symp, pp.945-954, 1999.

T. Tudorache, C. Nyulas, N. F. Noy, and M. A. Musen, Webprotégé : A collaborative ontology editor and knowledge acquisition tool for the web, Semantic Web, vol.4, issue.1, pp.89-99, 2013.

P. L. Whetzel, N. F. Noy, N. H. Shah, P. R. Alexander, C. Nyulas et al., BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications, Nucleic Acids Research, vol.39, issue.suppl, pp.39541-545, 2011.
DOI : 10.1093/nar/gkr469

P. L. Whetzel, N. H. Shah, N. F. Noy, B. Dai, M. Dorf et al., BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse, International Conference on Biomedical Ontology, ICBO'09, p.197, 2009.
DOI : 10.1038/npre.2009.3868.1

URL : https://hal.archives-ouvertes.fr/hal-00492020