Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle, Journal of Computational Biology, vol.9, issue.5, pp.687-705, 2002. ,
DOI : 10.1089/106652702761034136
URL : https://hal.archives-ouvertes.fr/lirmm-00269513
Theoretical Foundation of the Balanced Minimum Evolution Method of Phylogenetic Inference and Its Relationship to Weighted Least-Squares Tree Fitting, Molecular Biology and Evolution, vol.21, issue.3, pp.587-598, 2004. ,
DOI : 10.1093/molbev/msh049
URL : https://hal.archives-ouvertes.fr/lirmm-00108569
Neighbor-Joining Revealed, Molecular Biology and Evolution, vol.23, issue.11, pp.1997-2000, 2006. ,
DOI : 10.1093/molbev/msl072
URL : https://hal.archives-ouvertes.fr/lirmm-00136653
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0, Systematic Biology, vol.59, issue.3, pp.307-321, 2010. ,
DOI : 10.1093/sysbio/syq010
URL : https://hal.archives-ouvertes.fr/lirmm-00511784
A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates, Mol Biol Evol, vol.11, pp.459-468, 1994. ,
Direct Calculation of a Tree Length Using a Distance Matrix, Journal of Molecular Evolution, vol.51, issue.1, pp.41-47, 2000. ,
DOI : 10.1007/s002390010065
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix, Molecular Biology and Evolution, vol.26, issue.7, pp.1641-1650, 2009. ,
DOI : 10.1093/molbev/msp077
Theoretical foundation of the minimumevolution method of phylogenetic inference, Mol Biol Evol, vol.10, pp.1073-1095, 1993. ,
1987 The neighbor-joining method: a new method for reconstruction of phylogenetic trees, Mol Biol Evol, vol.4, pp.406-425 ,
A note on the neighbor-joining algorithm of Saitou and Nei, Mol Biol Evol, vol.5, pp.729-731, 1988. ,
Shortest triplet clustering: reconstructing large phylogenies using representative sets, BMC Bioinformatics, vol.6, issue.1, p.92, 2005. ,
DOI : 10.1186/1471-2105-6-92