J. Blake, Bio-ontologies???fast and furious, Nature Biotechnology, vol.5, issue.6, pp.773-777, 2004.
DOI : 10.1093/nar/gkh066

O. Bodenreider and R. Stevens, Bio-ontologies: current trends and future directions, Briefings in Bioinformatics, vol.7, issue.3, pp.256-74, 2006.
DOI : 10.1093/bib/bbl027

URL : https://academic.oup.com/bib/article-pdf/7/3/256/936193/bbl027.pdf

P. Whetzel, N. Noy, N. Shah, P. Alexander, M. Dorf et al., BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse, CEUR Workshop Proceedings, pp.292-293
DOI : 10.1038/npre.2009.3868.1

URL : https://hal.archives-ouvertes.fr/hal-00492020

P. Whetzel, N. Noy, N. Shah, P. Alexander, C. Nyulas et al., BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications, Nucleic Acids Research, vol.39, issue.suppl, pp.541-546, 2011.
DOI : 10.1093/nar/gkr469

D. Rubin, S. Lewis, C. Mungall, S. Misra, M. Westerfield et al., National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge, OMICS: A Journal of Integrative Biology, vol.10, issue.2, pp.185-98, 2006.
DOI : 10.1089/omi.2006.10.185

C. Jonquet, M. Musen, and N. Shah, Building a biomedical ontology recommender web service, Journal of Biomedical Semantics, vol.1, issue.Suppl 1, p.1, 2010.
DOI : 10.1038/nbt1346

URL : https://hal.archives-ouvertes.fr/hal-00489093

J. Brank, M. Grobelnik, and D. Mladeni?, A survey of ontology evaluation techniques, Proceedings of the conference on data mining and data warehouses, 2005.

M. Sabou, V. Lopez, and E. Motta, Ontology Selection for the Real Semantic Web: How to Cover the Queen???s Birthday Dinner?, Proceedings of international conference on knowledge engineering and knowledge management, pp.96-111, 2006.
DOI : 10.1007/11891451_12

I. Cantador, M. Fernández, and P. Castells, Improving ontology recommendation and reuse in WebCORE by collaborative assessments, Work Soc collab constr struct knowl 16th Int world wide Web conf, 2007.

A. Gomez-perez, Some ideas and examples to evaluate ontologies, Proceedings the 11th Conference on Artificial Intelligence for Applications, 1994.
DOI : 10.1109/CAIA.1995.378808

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.54.7288

A. Gómez-pérez, From knowledge based systems to knowledge sharing technology: evaluation and assessment

T. Gruber, Toward principles for the design of ontologies used for knowledge sharing?, International workshop on formal ontology, 1993.
DOI : 10.1006/ijhc.1995.1081

T. Berners-lee, J. Hendler, and O. Lassila, The Semantic Web, Scientific American, vol.284, issue.5, pp.34-43, 2001.
DOI : 10.1038/scientificamerican0501-34

T. Finin, P. Reddivari, R. Cost, and J. S. Sachs, A search and metadata engine for the semantic Web, Proceedings of the 13th ACM conference on Information and Knowledge Management (CIKM '04), pp.652-661, 2004.

C. Patel, K. Supekar, Y. Lee, E. Park, and . Ok, A semantic Web portal for ontology searching, ranking, and classification, Proc 5th ACM CIKM Int work Web Inf data manag, pp.58-61, 2003.

Y. Zhang, W. Vasconcelos, and D. Sleeman, OntoSearch : an ontology search engine. In: Research and development in intelligent systems XXI, pp.58-69, 2005.
DOI : 10.1007/1-84628-102-4_5

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.104.335

H. Alani, N. Noy, N. Shah, N. Shadbolt, and M. Musen, Searching ontologies based on content, Proceedings of the 4th international conference on Knowledge capture , K-CAP '07, pp.55-62
DOI : 10.1145/1298406.1298418

P. Buitelaar, T. Eigner, and T. Declerck, OntoSelect: a dynamic ontology library with support for ontology selection, Proceedings of the demo session at the international semantic Web conference (ISWC), 2004.

H. Alani, C. Brewster, and N. Shadbolt, Ranking Ontologies with AKTiveRank, Proceedings of the international semantic Web conference (ISWC), pp.1-15, 2006.
DOI : 10.1007/11926078_1

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.103.7923

S. Tartir, I. Arpinar, M. Moore, A. Sheth, and B. Aleman-meza, OntoQA: metric-based ontology quality analysis. In: IEEE work knowl acquis from distrib auton semant heterog data knowl sources, pp.45-53, 2005.

M. Martínez-romero, J. Vázquez-naya, J. Pereira, and A. Pazos, BiOSS: A system for biomedical ontology selection, Computer Methods and Programs in Biomedicine, vol.114, issue.1, pp.125-165, 2014.
DOI : 10.1016/j.cmpb.2014.01.020

D. 'aquin, M. Lewen, and H. , Cupboard -a place to expose your ontologies to applications and the community, Lect Notes Comput Sci (including Subser Lect Notes Artif Intell Lect Notes Bioinformatics), vol.5554, pp.913-921, 2009.

H. Tan and P. Lambrix, Selecting an ontology for biomedical text mining, Proceedings of the Workshop on BioNLP, BioNLP '09, pp.55-62, 2009.
DOI : 10.3115/1572364.1572372

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.159.5871

G. Maiga, A flexible biomedical ontology selection tool, Strength Role ICT Dev, vol.5, pp.171-89, 2009.

M. Martínez-romero, J. Vázquez-naya, J. Pereira, and A. Pazos, A Multi-criteria Approach for Automatic Ontology Recommendation Using Collective Knowledge, Recommender Systems for the Social Web, pp.89-104, 2012.
DOI : 10.1007/978-3-642-25694-3_4

C. Jonquet, N. Shah, C. H. Musen, M. Callendar, and C. , Storey M-a: NCBO annotator : semantic annotation of biomedical data, International semantic Web conference (ISWC), poster and demo session, 2009.

P. López-garcía, S. Schulz, and R. Kern, Automatic summarization for terminology recommendation : the case of the NCBO ontology recommender, pp.7-11

M. Sabou, V. Lopez, E. Motta, and V. Uren, Ontology selection: ontology evaluation on the real semantic Web, 15th international world wide Web conference, pp.23-29, 2006.

K. Spackman, K. Campbell, and R. Côté, SNOMED RT: a reference terminology for health care, Conf proc Am Med informatics assoc annu fall symp, pp.640-644, 1997.

M. Ashburner, C. Ball, J. Blake, D. Botstein, H. Butler et al., Gene Ontology: tool for the unification of biology, Nature Genetics, vol.9, issue.1, pp.25-34, 2000.
DOI : 10.1091/mbc.9.12.3273

O. Bodenreider, The Unified Medical Language System (UMLS): integrating biomedical terminology, Nucleic Acids Research, vol.32, issue.90001, pp.267-70, 2004.
DOI : 10.1093/nar/gkh061

URL : https://academic.oup.com/nar/article-pdf/32/suppl_1/D267/7621558/gkh061.pdf

B. Smith, M. Ashburner, C. Rosse, J. Bard, W. Bug et al., The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration, Nature Biotechnology, vol.10, issue.11, pp.1251-1256, 2007.
DOI : 10.1093/bioinformatics/btm155

Z. Xiang, C. Mungall, A. Ruttenberg, and Y. He, Ontobee: A linked data server and browser for ontology terms, CEUR Workshop Proceedings, pp.279-281

R. Côté, P. Jones, R. Apweiler, and H. Hermjakob, The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries, BMC Bioinformatics, vol.7, issue.1, p.97, 2006.
DOI : 10.1186/1471-2105-7-97

R. Hoehndorf, L. Slater, P. Schofield, and G. Gkoutos, Aber-OWL: a framework for ontology-based data access in biology, BMC Bioinformatics, vol.25, issue.1-2, pp.1-9, 2015.
DOI : 10.1007/s00335-013-9481-z

A. Bandrowski, R. Brinkman, M. Brochhausen, M. Brush, B. Bug et al., The Ontology for Biomedical Investigations, PLOS ONE, vol.2014, issue.5950, p.154556, 2016.
DOI : 10.1371/journal.pone.0154556.s001

URL : http://doi.org/10.1371/journal.pone.0154556

L. Schriml, C. Arze, S. Nadendla, Y. Chang, M. Mazaitis et al., Disease Ontology: a backbone for disease semantic integration, Nucleic Acids Research, vol.40, issue.D1, pp.940-946, 2012.
DOI : 10.1093/nar/gkr972

URL : https://academic.oup.com/nar/article-pdf/40/D1/D940/9483432/gkr972.pdf

J. Tenenbaum, P. Whetzel, K. Anderson, C. Borromeo, I. Dinov et al., The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research, Journal of Biomedical Informatics, vol.44, issue.1, pp.137-182, 2011.
DOI : 10.1016/j.jbi.2010.10.003

C. Jonquet, P. Lependu, S. Falconer, A. Coulet, N. Noy et al., NCBO Resource Index: Ontology-based search and mining of biomedical resources, Web Semantics: Science, Services and Agents on the World Wide Web, vol.9, issue.3, pp.316-340, 2011.
DOI : 10.1016/j.websem.2011.06.005

URL : https://hal.archives-ouvertes.fr/hal-00557982

N. Noy, P. Alexander, R. Harpaz, P. Whetzel, R. Fergerson et al., Getting Lucky in Ontology Search: A Data-Driven Evaluation Framework for Ontology Ranking, Lect Notes Comput Sci (including Subser Lect Notes Artif Intell Lect Notes Bioinformatics), pp.8218-444, 2013.
DOI : 10.1007/978-3-642-41335-3_28

M. Musen, C. Bean, K. Cheung, M. Dumontier, K. Durante et al., The center for expanded data annotation and retrieval, Journal of the American Medical Informatics Association, vol.22, pp.1148-52, 2015.
DOI : 10.1093/jamia/ocv048

C. Jonquet, E. Dzal, E. Arnaud, P. Larmande, C. Jonquet et al., AgroPortal : a proposition for ontology-based services in the agronomic domain, IN-OVIVE'15: 3ème atelier INtégration de sources/masses de données hétérogènes et ontologies
URL : https://hal.archives-ouvertes.fr/lirmm-01172232

K. Frantzi, S. Ananiadou, and H. Mima, Automatic recognition of multi-word terms:. the C-value/NC-value method, International Journal on Digital Libraries, vol.3, issue.2, pp.115-145, 2000.
DOI : 10.1007/s007999900023

S. Melzi and C. Jonquet, Scoring semantic annotations returned by the NCBO Annotator, Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences (SWAT4LS'14). CEURWS, p.15, 2014.
URL : https://hal.archives-ouvertes.fr/lirmm-01099860

M. Kamdar, T. Tudorache, and M. Musen, A systematic analysis of term reuse and term overlap across biomedical ontologies, Semantic Web, vol.3, issue.1
DOI : 10.1186/1756-0500-3-175