On bases for the set of integers, Publ. Math. (Debr.), vol.1, pp.232-242, 1950. ,
An Eulerian path approach to DNA fragment assembly, Proc. Natl. Acad. Sci. USA 98, pp.9748-9753, 2001. ,
DOI : 10.1126/science.1058040
URL : http://www.pnas.org/content/98/17/9748.full.pdf
MindTheGap: integrated detection and assembly of short and long insertions, Bioinformatics, vol.30, issue.24, pp.3451-3457, 2014. ,
DOI : 10.1093/bioinformatics/btu545
URL : https://hal.archives-ouvertes.fr/hal-01087832
LoRDEC: accurate and efficient long read error correction, Bioinformatics, vol.30, issue.24, pp.3506-3514, 2014. ,
DOI : 10.1093/bioinformatics/btu538
URL : https://hal.archives-ouvertes.fr/lirmm-01100451
Succinct data structures for assembling large genomes, Bioinformatics, vol.27, issue.4, pp.479-486, 2011. ,
DOI : 10.1093/bioinformatics/btq697
URL : https://academic.oup.com/bioinformatics/article-pdf/27/4/479/16903192/btq697.pdf
Succinct de Bruijn Graphs, Lect. Notes Comput. Sci, vol.7534, pp.225-235, 2012. ,
DOI : 10.1007/978-3-642-33122-0_18
Space-efficient and exact de Bruijn graph representation based on a Bloom filter, Algorithms Mol. Biol, vol.8, issue.22, 2013. ,
DOI : 10.1007/978-3-642-33122-0_19
URL : https://hal.archives-ouvertes.fr/hal-00868805
IDBA ??? A Practical Iterative de Bruijn Graph De Novo Assembler, Research in Computational Molecular Biology, pp.426-440, 2010. ,
DOI : 10.1007/978-3-642-12683-3_28
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.157.195
Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter, Lect. Notes Comput. Sci, vol.7534, pp.236-248, 2012. ,
DOI : 10.1007/978-3-642-33122-0_19
URL : https://hal.archives-ouvertes.fr/hal-00868805
Correction of sequencing errors in a mixed set of reads, Bioinformatics, vol.26, issue.10, pp.1284-1290, 2010. ,
DOI : 10.1093/bioinformatics/btq151
Detecting Superbubbles in Assembly Graphs, Algorithms in Bioinformatics Lect. Notes Comput. Sci, vol.8126, pp.338-348, 2013. ,
DOI : 10.1007/978-3-642-40453-5_26
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.744.5621
Efficient construction of an assembly string graph using the FM-index, Bioinformatics, vol.26, issue.12, pp.367-373, 2010. ,
DOI : 10.1093/bioinformatics/btq217
A Space-Economical Suffix Tree Construction Algorithm, Journal of the ACM, vol.23, issue.2, pp.262-272, 1976. ,
DOI : 10.1145/321941.321946
The myriad virtues of suffix trees, Combinatorial Algorithms on Words, pp.85-96, 1985. ,
Suffix Arrays: A New Method for On-Line String Searches, SIAM Journal on Computing, vol.22, issue.5, pp.935-948, 1993. ,
DOI : 10.1137/0222058
URL : http://webglimpse.net/pubs/suffix.pdf
Truncated suffix trees and their application to data compression, Theoretical Computer Science, vol.304, issue.1-3, pp.1-3, 2003. ,
DOI : 10.1016/S0304-3975(03)00053-7
URL : https://doi.org/10.1016/s0304-3975(03)00053-7
The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences, International Journal of Bioinformatics Research and Applications, vol.4, issue.1, pp.81-95, 2008. ,
DOI : 10.1504/IJBRA.2008.017165
From Indexing Data Structures to de Bruijn Graphs, Proc. of the 25th Annual Symposium on Combinatorial Pattern Matching (CPM), pp.89-99, 2014. ,
DOI : 10.1007/978-3-319-07566-2_10
URL : https://hal.archives-ouvertes.fr/lirmm-01081429
Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree, Proc. of the 9th Int. Conf. on Language and Automata Theory and Applications (LATA), pp.109-120, 2015. ,
DOI : 10.1007/978-3-319-15579-1_8
On-line construction of suffix trees, Algorithmica, vol.10, issue.3, pp.249-260, 1995. ,
DOI : 10.1145/321941.321946
Bioinformatics Algorithms: Sequence Analysis, Genome Rearrangements, and Phylogenetic Reconstruction, p.604, 2013. ,
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing, Journal of Computational Biology, vol.19, issue.5, pp.455-477, 2012. ,
DOI : 10.1089/cmb.2012.0021
URL : https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342519/pdf
Variable-Order de Bruijn Graphs, 2015 Data Compression Conference, pp.2015-383, 2015. ,
DOI : 10.1109/DCC.2015.70
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.763.3825