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, mediterraneus genome consortium for access to the genome annotation Funding: The work conducted by was funded by LabEx NUMEV and supported by the ATGC bioinformatics platform. The work conducted by the U.S. Department of Energy (DOE) JGI, a DOE Office of Science User Facility, was supported by the Office of Science of the U.S. DOE under contract no. DE-AC02-05CH11231. This work was funded by the European Community's 7th Framework program FP7 under grant agreement no. 254619 to, Acknowledgments: We would like to thank the GenoToul bioinformatics platform for access to computing cluster facilities and the O and by the Agence Nationale de la Recherche under grant agreement ANR-13-JSV6-0005 to G.P. and S.S.-F. Author contributions

R. B. , S. Y. , M. H. , E. R. , W. S. et al., P. contributed to bioinformatic analysis of the Illumina data set

G. P. , S. S. , W. S. , J. M. , I. V. et al., contributed to RCC1115 annotation and set up the web portal wrote the manuscript All authors participated in manuscript revisions. G.P. conceived the study Competing interests: The authors declare that they have no competing interests. Data and materials availability: All PE read Illumina data sets have been submitted to GenBank under the following Sequence Read Archive accession nos, RCC1108: SRP081304, RCC1110: SRP081303, RCC1112: SRP081306, RCC1114: SRX2018736, RCC1115: SRX2018766, RCC1116: SRX2018764, RCC1117: SRP081308, RCC1118: SRP081305, RCC1123: SRP081307, RCC1558: SRX2018765, RCC1559: SRX2018767, RCC1561: SRP081309, and RCC4221: SRX030853. Genome browsers of strains RCC1115 (GenBank accession, NERT01000000) and RCC4221 (GenBank accession, CAID01000001.1 to CAID01000020.1) are available via the JGI genome portals, 1126.

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