A. J. Drummond, A. Rambaut, B. Shapiro, and O. G. Pybus, Bayesian coalescent inference of past population dynamics from molecular sequences, Mol. Biol. Evol, vol.22, pp.1185-1192, 2005.

A. J. Drummond, M. A. Suchard, D. Xie, and A. Rambaut, Bayesian phylogenetics with BEAUti and the BEAST 1.7, Mol. Biol. Evol, vol.29, issue.8, pp.1969-1973, 2012.

F. Chevenet, C. Brun, A. L. Banuls, J. B. , and C. R. , TreeDyn: towards dynamic graphics and annotations for analyses of trees, BMC Bioinformatics, vol.7, p.439, 2006.
URL : https://hal.archives-ouvertes.fr/hal-00321061

F. Chevenet, O. Croce, M. Hebrard, C. R. Berry, and V. , ScripTree: scripting phylogenetic graphics, Bioinformatics, vol.26, issue.8, pp.1125-1126, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00497209

F. Ronquist and J. P. Huelsenbeck, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, vol.19, pp.1572-1574, 2003.

K. Mary and . Kuhner, LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters, Bioinformatics, vol.22, issue.6, pp.768-770, 2006.

F. Bielejec, A. Rambaut, M. A. Suchard, and P. Lemey, Spread: spatial phylogenetic reconstruction of evolutionary dynamics, Bioinformatics, vol.27, pp.2910-2912, 1920.

A. M. Walimbe, M. Lotankar, D. Cecilia, and S. S. Cherian, Global phylogeography of Dengue type 1 and 2 viruses reveals the role of India, Infection, Genetics and Evolution, vol.22, pp.30-39, 2014.

, Acknowledgements: This work is supported by the Institut de Biologie Computationnelle ANR