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RNA-SequenLens for Visualizing RNA Secondary Structures

Florence Ying Wang 1 Arnaud Sallaberry 1, 2 Mathieu Roche 3, 1 
1 ADVANSE - ADVanced Analytics for data SciencE
LIRMM - Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier
2 UPVM - Université Paul-Valéry - Montpellier 3
3 UMR TETIS - Territoires, Environnement, Télédétection et Information Spatiale
Abstract : In this paper, we present RNA-SequenLens to facilitate the visualization and comparison of RNA secondary structures. With RNA-SequenLens, all possible base pairings of a RNA sequence can be visualized at the desired probability threshold. Different RNA secondary structures can be easily compared. The interactive demo is available at https://youtu.be/C6EDC8LZJXw
Keywords : Visual Analytic
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Conference papers
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https://hal-lirmm.ccsd.cnrs.fr/lirmm-01184562
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Submitted on : Sunday, August 16, 2015 - 6:02:54 AM
Last modification on : Friday, August 5, 2022 - 3:02:49 PM
Long-term archiving on: : Tuesday, November 17, 2015 - 10:11:35 AM

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  • HAL Id : lirmm-01184562, version 1

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CIRAD | AGROPARISTECH | CNRS | UNIV-MONTP3 | IRSTEA | ADVANSE | LIRMM | AGROPOLIS | TETIS | MIPS | UNIV-MONTPELLIER | INRAE | INRAEOCCITANIEMONTPELLIER

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Florence Ying Wang, Arnaud Sallaberry, Mathieu Roche. RNA-SequenLens for Visualizing RNA Secondary Structures. BioVis: Biological Data Visualization, Jul 2015, Dublin, Ireland. ⟨lirmm-01184562⟩

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