Ontology-based services and knowledge management in the Agronomic Domain

Pierre Larmande 1, 2, 3
3 ZENITH - Scientific Data Management
LIRMM - Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier, CRISAM - Inria Sophia Antipolis - Méditerranée
Abstract : The drastic growth in data in the recent years, within the Agronomic sciences has brought the concept of knowledge management to the forefront. Some of the factors that contribute to this change include a) conducting high-throughput experiments have become affordable, the time spent in generating data through these experiments are minuscule when compared to its integration and analysis; b) publishing data over the web is fairly trivial and c) multiple databases exist for each type of data (i.e. ‘omics’ data) with a possible overlap or slight variation in its coverage. In most cases these sources remain autonomous and disconnected. Hence, efficiently managed data and the underlying knowledge in principle will make data analysis straightforward aiding in more efficient decision making. At the Institute of Computational Biology (IBC), we are involved in developing methods to aid data integration and knowledge management within the domain of Agronomic sciences to improve information accessibility and interoperability. To this end, we address the challenge by pursuing several complementary research directions towards: distributed, heterogeneous data integration. This talk will focus mainly on, ongoing projects at IBC: a) The AgroPortal project aims at developing a reference ontology repository for the agronomic domain. By reusing the NCBO BioPortal technology, we will offer an ontology portal which features ontology hosting, search, versioning, visualization, comment, but we will also offer services for semantically annotating data with the ontologies, as well as storing and exploiting ontology alignments and data annotations. b) Agronomic Linked Data (AgroLD): is a Semantic Web knowledge base designed to integrate data from various publically available plant centric data sources. These include Gramene, Oryzabase, TAIR and resources from the South Green platform among many others. The aim of AgroLD project is to provide a portal for bioinformaticians and domain experts to exploit the homogenized data towards enabling to bridge the knowledge.
Type de document :
Communication dans un congrès
RDA: Research Data Alliance, Sep 2015, Paris, France. The 6th Research Data Alliance plenary meeting, 2015, 〈https://rd-alliance.org/plenary-meetings/rda-sixth-plenary-meeting.html〉
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https://hal-lirmm.ccsd.cnrs.fr/lirmm-01274693
Contributeur : Pierre Larmande <>
Soumis le : mardi 16 février 2016 - 10:27:14
Dernière modification le : samedi 27 janvier 2018 - 01:31:47

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  • HAL Id : lirmm-01274693, version 1

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Pierre Larmande. Ontology-based services and knowledge management in the Agronomic Domain. RDA: Research Data Alliance, Sep 2015, Paris, France. The 6th Research Data Alliance plenary meeting, 2015, 〈https://rd-alliance.org/plenary-meetings/rda-sixth-plenary-meeting.html〉. 〈lirmm-01274693〉

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