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Conference Papers Year : 2011

Phylogenetic Models and Reconstructions

Abstract

Presentation of the main approaches to build phylogenetic trees from sequence data. The focus will be on : (1) probabilistic models of sequence evolution (JC, K2P, HKY, GTR, JTT, WAG and LG) ; (2) modeling of rates accross sites using gama distributions ; (3) likelihood calculations; (4) tree inference approaches ; (5) bootstrap and other branch supports. I'll both explain the theory and train the students with practicals using standard programs and web servers (PHYLIP, PhyML, Phylogeny.fr).
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Dates and versions

lirmm-00715604 , version 1 (08-07-2012)

Identifiers

  • HAL Id : lirmm-00715604 , version 1

Cite

Olivier Gascuel. Phylogenetic Models and Reconstructions. IBSS'11: International Bioinformatics Software School, Tanger, Morocco. ⟨lirmm-00715604⟩
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