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Conference papers

Phylogenetic Models and Reconstructions

Olivier Gascuel 1, *
* Corresponding author
1 MAB - Méthodes et Algorithmes pour la Bioinformatique
LIRMM - Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier
Abstract : Presentation of the main approaches to build phylogenetic trees from sequence data. The focus will be on : (1) probabilistic models of sequence evolution (JC, K2P, HKY, GTR, JTT, WAG and LG) ; (2) modeling of rates accross sites using gama distributions ; (3) likelihood calculations; (4) tree inference approaches ; (5) bootstrap and other branch supports. I'll both explain the theory and train the students with practicals using standard programs and web servers (PHYLIP, PhyML, Phylogeny.fr).
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https://hal-lirmm.ccsd.cnrs.fr/lirmm-00715604
Contributor : Olivier Gascuel <>
Submitted on : Sunday, July 8, 2012 - 7:21:48 PM
Last modification on : Thursday, May 24, 2018 - 3:59:22 PM

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  • HAL Id : lirmm-00715604, version 1

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Olivier Gascuel. Phylogenetic Models and Reconstructions. IBSS'11: International Bioinformatics Software School, Tanger, Morocco. ⟨lirmm-00715604⟩

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