RedOak

RedOak stand for Reference-free[d] Optimized approach by k-mers, RedOak is an alignment-free and reference-free software which allows to index a large collection of similar genomes. RedOak can also be applied to reads from unassembled genomes.

Mots clés

indexation k-mers pangenomics comparative genomics genomic variations

Domaines

Bio-informatique [q-bio.QM]

Cathy Tuchming : Connectez-vous pour contacter le contributeur

https://hal-lirmm.ccsd.cnrs.fr/lirmm-03925385

Soumis le : jeudi 5 janvier 2023-15:58:12

Dernière modification le : vendredi 31 mai 2024-18:32:03

Dates et versions

lirmm-03925385 , version 1 (05-01-2023)

Identifiants

HAL Id : lirmm-03925385 , version 1
SWHID : swh:1:dir:b0ab791cdb79f7adebb98549a2546e0b070b8237;origin=https://gite.lirmm.fr/doccy/RedOak;visit=swh:1:snp:ee2f64fb510a243f2e7ac0875b80c782c4bc0351;anchor=swh:1:rev:c875c2a7a70de544e900ffdbc0fecc11c8ecd469

version : v0.1.4
Licences : CeCILL Free Software License Agreement v2.1
Langage de programmation : C++
Code Repository : https://gite.lirmm.fr/doccy/RedOak
Platform/OS : GNU/Linux

Citer

Clément Agret, Alban Mancheron, Gautier Sarah. RedOak. 2017, ⟨swh:1:dir:b0ab791cdb79f7adebb98549a2546e0b070b8237;origin=https://gite.lirmm.fr/doccy/RedOak;visit=swh:1:snp:ee2f64fb510a243f2e7ac0875b80c782c4bc0351;anchor=swh:1:rev:c875c2a7a70de544e900ffdbc0fecc11c8ecd469⟩. ⟨lirmm-03925385⟩

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