We prove that every digraph of independence number at most 2 and arc-connectivity at least 2 has an out-branching $B+$ and an in-branching $B−$ which are arc-disjoint (we call such branchings a good pair). This is best possible in terms of the arc-connectivity as there are infinitely many strong digraphs with independence number 2 and arbitrarily high minimum in- and out-degrees that have no good pair. The result settles a conjecture by Thomassen for digraphs of independence number 2. We prove that every digraph on at most 6 vertices and arc-connectivity at least 2 has a good pair and give an example of a 2-arc-strong digraph $D$ on 10 vertices with independence number 4 that has no good pair. We also show that there are infinitely many digraphs with independence number 7 and arc-connectivity 2 that have no good pair. Finally we pose a number of open problems.